3

Does the +100 bonus rep for associating accounts across different Stack Exchange sites go against the +200 daily rep count?

4

Nope, it's as @ChrisF mentioned.

Reputation is capped at 200 points from votes.

If you have an answer accepted, you accept an answer or you are awarded a bounty these points are immune from the cap and can take your daily reputation over 200.

You can audit your rep , FYI.

You'll see something like this:

 ...
 2   3808773 (10)
 2   3809241 (10)  << still receiving points
 2   3809241 [0]   << boom! cap exceeded
 1   3809204 [15]  << cap exceeded, but still get points for accepts
 2   3809058 [0]
 2   3809204 [0]
 2   3809204 [0]
 2   3809159 [0]
 2   3682202 [0]
 1   3808636 [15]
 2   3808636 [0]
 2   3432741 [0]
 2   3808497 [0]
 1   3809241 [15]
-- 2010-09-28 rep +260  = 13997   

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